The best recommendation I can give as to where to edit would be the /components/com_jfbconnect/libraries/provider/facebook.php file. Around line 396, you'll see:
$version = "version: 'v1.0',";
Update that too:
$version = "version: 'v2.0',";
We already have that code change set for our upcoming 6.3 release. From everything I've read and seen, that value shouldn't matter since you have the migration setting enabled, but definitely test and let us know what you find.
Again, from my testing using Safari on iPad/iOS, I didn't see this issue, which makes it more difficult for me to diagnose. We also haven't had any other reports of this issue.
Thanks,
Alex